Sample Set Annotation Tool: Whole blood mRNA expression profiling of host molecular networks in neonatal sepsis - GSE25504 - GPL570

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

We aimed to identify the gene network and pathway biology associated with neonatal sepsis by determining genome-wide alterations in host RNA in infected infants

Hypothesis

Experimental Design

Samples were obtained from control and infected human neonates.

Experimental Variables

Sepsis (2021 ICD-10-CM code* = A41)

Controls

Methods

Additional Information

Expected Samples:

5 Samples Loaded: 5

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Sepsis

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	Gender	tissue	Grouping	Birthweight (g)
GSM1404208	Con006	Male	peripheral blood	Control	4240
GSM1404209	Con014	Female	peripheral blood	Control	2970
GSM1404210	Con030	Male	peripheral blood	Control	3270
GSM1404211	Inf012	Female	peripheral blood	Infected	2150
GSM1404212	Inf032	Female	peripheral blood	Infected	3180

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File
GSE25504 GPL570 modified.csv Sample Set Spreadsheet
sampleset4000105_sampleannotationsGSE25504_GPL570_new.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Gender	Tissue	Grouping	Birthweight (g)	Bloodculture result	Corrected gestational age (weeks+days)	On antibiotics at time of sample	Other positive results
GSM1404208	Con006	Male	peripheral blood	Control	4240	negative	41+3	No	no
GSM1404209	Con014	Female	peripheral blood	Control	2970	na	38+3	No	no
GSM1404210	Con030	Male	peripheral blood	Control	3270	na	40+1	No	umbilical swab grew proteus (may represent colonisation)
GSM1404211	Inf012	Female	peripheral blood	Infected	2150	negative	34+6	No	CSF: enterovirus on PCR. CSF also grew coag neg staph, CSF WCC 300, RBC 9
GSM1404212	Inf032	Female	peripheral blood	Infected	3180	negative	41+1	No	yes CSF grew Listeria monocytogenes, CSF white cell count 551, RBC 119, urine no growth

Group Sets View in Gene Expression Browser

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Module Analysis

Group Set
All Samples
Grouping

SIDRA