Sample Set Annotation Tool: Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis - GSE13015 - GPL6947 [Septicemic Melioidosis, Sepsis, Type 2 Diabetes (T2D)]

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Melioidosis is a severe infectious disease caused by Burkholderia pseudomallei, a gram-negative bacillus classified by the NIAID as a category B priority agent. Septicemia is ...

Hypothesis

Experimental Design

Whole blood obtained from patients with sepsis caused by B.pseudomallei or other pathogens were collected. mRNA Expression level of each patient was determined and compared ...

Experimental Variables

Septicemic Melioidosis (2021 ICD-10-CM code* = A24.1)

Controls

Methods

The data were analysed using BeadStudio version 3.1.3.0 using the average chip normalization method.

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE13015

Expected Samples:

39 Samples Loaded: 39

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Septicemic Melioidosis

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	Age	Ethnicity	Gender	Illness
GSM365197	I027	64	Not Hispanic or Latino	F	Sepsis/Other infections
GSM365198	I028	81	Not Hispanic or Latino	F	Sepsis/Other infections
GSM365199	I029	74	Not Hispanic or Latino	F	Sepsis/Other infections
GSM365200	I031	48	Not Hispanic or Latino	M	Sepsis/Other infections
GSM365201	I032	54	Not Hispanic or Latino	F	Sepsis/Other infections

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File
sampleset4000130_sampleannotations_v1_GSE13015_GPL6947.csv Sample Set Spreadsheet
sampleset4000130_sampleannotations_v1_GSE13015_GPL6947.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Age	Ethnicity	Gender	Illness	Race	Treatment	Pathogen	Illness V1
GSM365197	I027	64	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Fortum, Ceftriaxone	E. coli	Sepsis/Other infections
GSM365198	I028	81	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Ceftriaxone, Fortum,Clindamycin	Corynebacterium spp.	Sepsis/Other infections
GSM365199	I029	74	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Fortum,Ceftriaxone,Tazocin	Staphylococcus aureus	Sepsis/Other infections
GSM365200	I031	48	Not Hispanic or Latino	M	Sepsis/Other infections	Asian	Fortum	Enterococcus spp	Sepsis/Other infections
GSM365201	I032	54	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Fortum, Tazocin	Enterococcus faecium	Sepsis/Other infections
GSM365202	I033	63	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Tazocin, Ceftriaxone, Fortum	E. coli	Sepsis/Other infections
GSM365203	I034	43	Not Hispanic or Latino	M	Sepsis/Other infections	Asian	Tazocin	Aeromonas hydrophila	Sepsis/Other infections
GSM365204	M031	49	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Fortum, Bactrim, Trazocin	B.pseudomallei	Sepsis/Melioidosis
GSM365205	M032	54	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Fortum , Doxycycline, Sulperazone	B.pseudomallei	Sepsis/Melioidosis
GSM365206	M033	44	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Fortum , Sulperazone, Bactrim, Ciprofloxacin	B.pseudomallei	Sepsis/Melioidosis
GSM365207	M034	40	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Fortum, Bactrim, Ceftazidime, Ceftriaxone	B.pseudomallei	Sepsis/Melioidosis
GSM365208	M035	56	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Ceftriaxone, Ceftazidime, Fortum	B.pseudomallei	Sepsis/Melioidosis
GSM365209	M036	41	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Ceftriaxone, Ceftazidime	B.pseudomallei	Sepsis/Melioidosis
GSM365210	M037	42	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Bactrim, Fortum, Cloxacillin	B.pseudomallei	Sepsis/Melioidosis
GSM365211	M038	49	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Ceftriaxone, Fortum,Ceftazidime, Levofloxacin	B.pseudomallei	Sepsis/Melioidosis
GSM365212	H005	37	Not Hispanic or Latino	M	Control/healthy	Asian			Control
GSM365213	H006	35	Not Hispanic or Latino	M	Control/healthy	Asian			Control
GSM365214	H007	46	Not Hispanic or Latino	F	Control/healthy	Asian			Control
GSM365215	H008	67	Not Hispanic or Latino	M	Control/healthy	Asian			Control
GSM365216	H009	37	Not Hispanic or Latino	F	Control/healthy	Asian			Control
GSM365217	DM009	50	Not Hispanic or Latino	F	Control/type 2 diabetes	Asian			Control
GSM365218	DM010	50	Not Hispanic or Latino	F	Control/type 2 diabetes	Asian			Control
GSM365219	DM011	56	Not Hispanic or Latino	F	Control/type 2 diabetes	Asian			Control
GSM365220	DM012	57	Not Hispanic or Latino	F	Control/type 2 diabetes	Asian			Control
GSM365221	DM013	71	Not Hispanic or Latino	F	Control/type 2 diabetes	Asian			Control
GSM365229	Rerun_I014	54	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Ceftriaxone, Ceftazidime, Levofloxacin	Salmonella spp.	Sepsis/Other infections
GSM365230	Rerun_M007	50	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Ceftazidime, Tazocin	B.pseudomallei	Sepsis/Melioidosis
GSM365231	Rerun_M008	70	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Ceftazidime, Bactrim	B.pseudomallei	Sepsis/Melioidosis
GSM365232	Rerun_M009	48	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Sulperazone	B.pseudomallei	Sepsis/Melioidosis
GSM365233	Rerun_M012	56	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Sulperazone, Bactrim,Cetazidime	B.pseudomallei	Sepsis/Melioidosis
GSM365234	Rerun_M014	65	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Cloxacilin,Ceftazidime	B.pseudomallei	Sepsis/Melioidosis
GSM365235	Rerun_I009	52	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Ceftazidime, Cloxacillin	Staphylococcus aureus	Sepsis/Other infections
GSM365236	Rerun_I010	72	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Ceftriaxone	E.coli	Sepsis/Other infections
GSM365237	Rerun_I012	69	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Ceftazidime	C.albicans	Sepsis/Other infections
GSM365238	Rerun_M001	68	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Ceftazidime, Bactrim	B.pseudomallei	Sepsis/Melioidosis
GSM365239	Rerun_M002	43	Not Hispanic or Latino	F	Sepsis/Melioidosis	Asian	Ceftriaxone, Ceftazidime	B.pseudomallei	Sepsis/Melioidosis
GSM365240	Rerun_M006	46	Not Hispanic or Latino	M	Sepsis/Melioidosis	Asian	Ceftriaxone	B.pseudomallei	Sepsis/Melioidosis
GSM365241	Rerun_I001	52	Not Hispanic or Latino	M	Sepsis/Other infections	Asian	Ceftriaxone	Streptococcus non A,B	Sepsis/Other infections
GSM365242	Rerun_I008	70	Not Hispanic or Latino	F	Sepsis/Other infections	Asian	Bactrim, Ceftazidime	E.coli	Sepsis/Other infections

Group Sets View in Gene Expression Browser

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Module Analysis

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