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Clinical

Unique Patients from the Genomics of Pediatric SIRS and Septic Shock Investigators (GPSSSI) - GSE66099

Purpose

This dataset is composed of the unique patients (276; at the Day 1 timepoint) that are present in the six other GEO datasets published by Hector Wong and the Genomics of Pediatric SIRS and Septic Shock Investigators. This dataset thus includes all unique patients from GSE4607, GSE8121, GSE9692, GSE13904, GSE26378, and GSE26440. These are only from the Day 1 timepoint.

Hypothesis

--

Experimental Design

The original studies examined pediatric patients admitted to the ICU, who were later classified as either SIRS (non-infectious) or Sepsis or Septic Shock (infectious). There is also a group of healthy controls. Although the original studies examine patients at both ICU day 1 and ICU day 3, here we have only aggregated ICU day 1 patients. All samples here were downloaded as .CEL files and re-normalized together using gcRMA using R package 'affy'. The normalized data can be found on the series record and contains the gcRMA normalized expression values.

Experimental Variables

Systemic inflammatory response syndrome (2021 ICD-10-CM code* = R65.1)

Sepsis (2021 ICD-10-CM code* = A41)

Septic shock (2021 ICD-10-CM code* = R65.21)

Controls

--

Methods

All samples here were downloaded as .CEL files and re-normalized together using gcRMA using R package 'affy'.

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE66099

Microarray
Affymetrix HG-U133_Plus_2
276 Samples Loaded: 276
Human (Homo sapiens)
Whole Blood
Systemic inflammatory response syndrome, sepsis, and septic shock
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title tissue disease icu_day Disease_v1
GSM1617492 15-0005 whole blood Control 1 Healthy Control
GSM1617493 15-0003 whole blood Control 1 Healthy Control
GSM1617494 15-0002 whole blood Control 1 Healthy Control
GSM1617495 15-0001 whole blood Control 1 Healthy Control
GSM1617496 11-0027 whole blood Control 1 Healthy Control
Please log in in order to upload files.
File
sampleset4000170_sampleannotations.csv
Sample Set Spreadsheet
sampleset4000170_sampleannotations.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Tissue Disease Icu Day Disease V1
GSM1617492
15-0005
whole blood
Control
1
Healthy Control
GSM1617493
15-0003
whole blood
Control
1
Healthy Control
GSM1617494
15-0002
whole blood
Control
1
Healthy Control
GSM1617495
15-0001
whole blood
Control
1
Healthy Control
GSM1617496
11-0027
whole blood
Control
1
Healthy Control
GSM1617497
11-0020
whole blood
Control
1
Healthy Control
GSM1617498
11-0019
whole blood
Control
1
Healthy Control
GSM1617499
11-0018
whole blood
Control
1
Healthy Control
GSM1617500
11-0014
whole blood
Control
1
Healthy Control
GSM1617501
11-0013
whole blood
Control
1
Healthy Control
GSM1617502
11-0012
whole blood
Control
1
Healthy Control
GSM1617503
11-0011
whole blood
Control
1
Healthy Control
GSM1617504
11-0009
whole blood
Control
1
Healthy Control
GSM1617505
11-0008
whole blood
Control
1
Healthy Control
GSM1617506
04-0005
whole blood
SepticShock
1
SepticShock
GSM1617507
04-0003
whole blood
SepticShock
1
SepticShock
GSM1617508
01-0013
whole blood
SepticShock
1
SepticShock
GSM1617509
15-0008
whole blood
SepticShock
1
SepticShock
GSM1617510
11-0017
whole blood
SepticShock
1
SepticShock
GSM1617511
10-0020
whole blood
SepticShock
1
SepticShock
GSM1617512
10-0017
whole blood
SepticShock
1
SepticShock
GSM1617513
26-260611
whole blood
SepticShock
1
SepticShock
GSM1617514
05-0011
whole blood
SepticShock
1
SepticShock
GSM1617515
12-0001
whole blood
SepticShock
1
SepticShock
GSM1617516
02-0001
whole blood
SepticShock
1
SepticShock
GSM1617517
01-0030
whole blood
SepticShock
1
SepticShock
GSM1617518
01-0025
whole blood
SepticShock
1
SepticShock
GSM1617519
01-0024
whole blood
SepticShock
1
SepticShock
GSM1617520
01-0021
whole blood
SepticShock
1
SepticShock
GSM1617521
01-0014
whole blood
SepticShock
1
SepticShock
GSM1617522
15-0007
whole blood
SepticShock
1
SepticShock
GSM1617523
15-0004
whole blood
SepticShock
1
SepticShock
GSM1617524
05-0007
whole blood
SepticShock
1
SepticShock
GSM1617525
11-0029
whole blood
SepticShock
1
SepticShock
GSM1617526
11-0010
whole blood
SepticShock
1
SepticShock
GSM1617527
10-0012
whole blood
SepticShock
1
SepticShock
GSM1617528
10-0001
whole blood
SepticShock
1
SepticShock
GSM1617529
09-0002
whole blood
SepticShock
1
SepticShock
GSM1617530
06-0006
whole blood
SepticShock
1
SepticShock
GSM1617531
06-0004
whole blood
SepticShock
1
SepticShock
GSM1617532
06-0003
whole blood
SepticShock
1
SepticShock
GSM1617533
05-0010
whole blood
SepticShock
1
SepticShock
GSM1617534
11-0036
whole blood
SIRS
1
SIRS
GSM1617535
04-0004
whole blood
SepticShock
1
SepticShock
GSM1617536
05-0003
whole blood
SepticShock
1
SepticShock
GSM1617537
05-0002
whole blood
SIRS
1
SIRS
GSM1617538
01-0027
whole blood
Sepsis
1
Sepsis
GSM1617539
01-0019
whole blood
SepticShock
1
SepticShock
GSM1617540
11-0006
whole blood
Sepsis
1
Sepsis
GSM1617541
11-0031
whole blood
SIRS
1
SIRS
GSM1617542
11-0024
whole blood
Sepsis
1
Sepsis
GSM1617543
11-0023
whole blood
Sepsis
1
Sepsis
GSM1617544
11-0022
whole blood
Sepsis
1
Sepsis
GSM1617545
11-0015
whole blood
Sepsis
1
Sepsis
GSM1617546
10-0002
whole blood
SIRS
1
SIRS
GSM1617547
11-0004
whole blood
Sepsis
1
Sepsis
GSM1617548
11-0003
whole blood
Sepsis
1
Sepsis
GSM1617549
10-0015
whole blood
SIRS
1
SIRS
GSM1617550
10-0010
whole blood
SIRS
1
SIRS
GSM1617551
10-0007
whole blood
SIRS
1
SIRS
GSM1617552
10-0006
whole blood
SIRS
1
SIRS
GSM1617553
10-0005
whole blood
SepticShock
1
SepticShock
GSM1617554
10-0004
whole blood
SepticShock
1
SepticShock
GSM1617555
07-0006
whole blood
SepticShock
1
SepticShock
GSM1617556
06-0002
whole blood
SIRS
1
SIRS
GSM1617557
25-070603
whole blood
SepticShock
1
SepticShock
GSM1617558
11-0001
whole blood
SepticShock
1
SepticShock
GSM1617559
09-0001
whole blood
SepticShock
1
SepticShock
GSM1617560
07-0002
whole blood
SepticShock
1
SepticShock
GSM1617561
06-0001
whole blood
SepticShock
1
SepticShock
GSM1617562
05-0008
whole blood
SepticShock
1
SepticShock
GSM1617563
05-0006
whole blood
SepticShock
1
SepticShock
GSM1617564
01-0026
whole blood
SepticShock
1
SepticShock
GSM1617565
01-0007
whole blood
SepticShock
1
SepticShock
GSM1617566
01-0036
whole blood
SepticShock
1
SepticShock
GSM1617567
01-0043
whole blood
SepticShock
1
SepticShock
GSM1617568
01-0044
whole blood
SepticShock
1
SepticShock
GSM1617569
01-0058
whole blood
SepticShock
1
SepticShock
GSM1617570
01-0059
whole blood
SepticShock
1
SepticShock
GSM1617571
01-0060
whole blood
SepticShock
1
SepticShock
GSM1617572
01-0061
whole blood
SepticShock
1
SepticShock
GSM1617573
01-0062
whole blood
SepticShock
1
SepticShock
GSM1617574
01-0066
whole blood
SepticShock
1
SepticShock
GSM1617575
01-0033
whole blood
SepticShock
1
SepticShock
GSM1617576
01-0045
whole blood
SepticShock
1
SepticShock
GSM1617577
01-0049
whole blood
SepticShock
1
SepticShock
GSM1617578
01-0051
whole blood
SepticShock
1
SepticShock
GSM1617579
01-0052
whole blood
SepticShock
1
SepticShock
GSM1617580
01-0053
whole blood
SepticShock
1
SepticShock
GSM1617581
02-0002
whole blood
SepticShock
1
SepticShock
GSM1617582
06-0009
whole blood
SepticShock
1
SepticShock
GSM1617583
10-0021
whole blood
SepticShock
1
SepticShock
GSM1617584
10-0029
whole blood
SepticShock
1
SepticShock
GSM1617585
11-0054
whole blood
SepticShock
1
SepticShock
GSM1617586
11-0057
whole blood
SepticShock
1
SepticShock
GSM1617587
12-0002
whole blood
SepticShock
1
SepticShock
GSM1617588
13-0002
whole blood
SepticShock
1
SepticShock
GSM1617589
14-0002
whole blood
SepticShock
1
SepticShock
GSM1617590
14-0004
whole blood
SepticShock
1
SepticShock
GSM1617591
15-0011
whole blood
SepticShock
1
SepticShock
GSM1617592
15-0012
whole blood
SepticShock
1
SepticShock
GSM1617593
17-0001
whole blood
SepticShock
1
SepticShock
GSM1617594
04-0011
whole blood
Control
1
Healthy Control
GSM1617595
04-0010
whole blood
Control
1
Healthy Control
GSM1617596
11-0052
whole blood
Control
1
Healthy Control
GSM1617597
01-0039
whole blood
SepticShock
1
SepticShock
GSM1617598
01-0063
whole blood
SIRS
1
SIRS
GSM1617599
01-0037
whole blood
SIRS
1
SIRS
GSM1617600
04-0008
whole blood
SIRS
1
SIRS
GSM1617601
10-0022
whole blood
SIRS
1
SIRS
GSM1617602
10-0023
whole blood
SIRS
1
SIRS
GSM1617603
11-0040
whole blood
SIRS
1
SIRS
GSM1617604
11-0049
whole blood
SIRS
1
SIRS
GSM1617605
11-0051
whole blood
SIRS
1
SIRS
GSM1617606
11-0016
whole blood
SIRS
1
SIRS
GSM1617607
11-0045
whole blood
SIRS
1
SIRS
GSM1617608
11-0046
whole blood
SIRS
1
SIRS
GSM1617609
11-0059
whole blood
SIRS
1
SIRS
GSM1617610
11-0060
whole blood
SIRS
1
SIRS
GSM1617611
14-0001
whole blood
SIRS
1
SIRS
GSM1617612
15-0010
whole blood
SIRS
1
SIRS
GSM1617613
01-0038
whole blood
Sepsis
1
Sepsis
GSM1617614
01-0046
whole blood
SIRS
1
SIRS
GSM1617615
01-0055
whole blood
Sepsis
1
Sepsis
GSM1617616
03-0001
whole blood
Sepsis
1
Sepsis
GSM1617617
04-0007
whole blood
SIRS
1
SIRS
GSM1617618
07-0005
whole blood
SIRS
1
SIRS
GSM1617619
10-0027
whole blood
SIRS
1
SIRS
GSM1617620
11-0041
whole blood
SIRS
1
SIRS
GSM1617621
11-0047
whole blood
SIRS
1
SIRS
GSM1617622
11-0053
whole blood
Sepsis
1
Sepsis
GSM1617623
11-0055
whole blood
Sepsis
1
Sepsis
GSM1617624
11-0021
whole blood
Sepsis
1
Sepsis
GSM1617625
11-0044
whole blood
Sepsis
1
Sepsis
GSM1617626
11-0050
whole blood
Sepsis
1
Sepsis
GSM1617627
15-0013
whole blood
Sepsis
1
Sepsis
GSM1617628
15-0009
whole blood
Sepsis
1
Sepsis
GSM1617629
01-0034
whole blood
SepticShock
1
SepticShock
GSM1617630
01-0087
whole blood
SepticShock
1
SepticShock
GSM1617631
01-0189
whole blood
SepticShock
1
SepticShock
GSM1617632
01-0092
whole blood
SepticShock
1
SepticShock
GSM1617633
01-0093
whole blood
SepticShock
1
SepticShock
GSM1617634
01-0095
whole blood
SepticShock
1
SepticShock
GSM1617635
01-0099
whole blood
SepticShock
1
SepticShock
GSM1617636
01-0109
whole blood
Control
1
Healthy Control
GSM1617637
01-0112
whole blood
Control
1
Healthy Control
GSM1617638
01-0114
whole blood
SepticShock
1
SepticShock
GSM1617639
01-0115
whole blood
Control
1
Healthy Control
GSM1617640
01-0116
whole blood
Control
1
Healthy Control
GSM1617641
01-0117
whole blood
Control
1
Healthy Control
GSM1617642
01-0129
whole blood
Control
1
Healthy Control
GSM1617643
01-0133
whole blood
SepticShock
1
SepticShock
GSM1617644
01-0134
whole blood
SepticShock
1
SepticShock
GSM1617645
01-0138
whole blood
SepticShock
1
SepticShock
GSM1617646
01-0142
whole blood
SepticShock
1
SepticShock
GSM1617647
01-0146
whole blood
SepticShock
1
SepticShock
GSM1617648
03-0003
whole blood
SepticShock
1
SepticShock
GSM1617649
04-0006
whole blood
SepticShock
1
SepticShock
GSM1617650
05-0019
whole blood
SepticShock
1
SepticShock
GSM1617651
05-0020
whole blood
SepticShock
1
SepticShock
GSM1617652
05-0023
whole blood
SepticShock
1
SepticShock
GSM1617653
05-0025
whole blood
SepticShock
1
SepticShock
GSM1617654
05-0028
whole blood
SepticShock
1
SepticShock
GSM1617655
06-0008
whole blood
SepticShock
1
SepticShock
GSM1617656
06-0011
whole blood
SepticShock
1
SepticShock
GSM1617657
06-0012
whole blood
SepticShock
1
SepticShock
GSM1617658
06-0013
whole blood
SepticShock
1
SepticShock
GSM1617659
07-0007
whole blood
SepticShock
1
SepticShock
GSM1617660
10-0026
whole blood
SepticShock
1
SepticShock
GSM1617661
10-0038
whole blood
SepticShock
1
SepticShock
GSM1617662
11-0037
whole blood
SepticShock
1
SepticShock
GSM1617663
11-0070
whole blood
SepticShock
1
SepticShock
GSM1617664
11-0075
whole blood
SepticShock
1
SepticShock
GSM1617665
11-0084
whole blood
SepticShock
1
SepticShock
GSM1617666
11-0086
whole blood
SepticShock
1
SepticShock
GSM1617667
11-0087
whole blood
Control
1
Healthy Control
GSM1617668
11-0090
whole blood
SepticShock
1
SepticShock
GSM1617669
11-0096
whole blood
SepticShock
1
SepticShock
GSM1617670
11-0109
whole blood
SepticShock
1
SepticShock
GSM1617671
13-0004
whole blood
SepticShock
1
SepticShock
GSM1617672
13-0005
whole blood
SepticShock
1
SepticShock
GSM1617673
13-0006
whole blood
SepticShock
1
SepticShock
GSM1617674
14-0006
whole blood
Control
1
Healthy Control
GSM1617675
15-0021
whole blood
SepticShock
1
SepticShock
GSM1617676
15-0023
whole blood
SepticShock
1
SepticShock
GSM1617677
15-0025
whole blood
SepticShock
1
SepticShock
GSM1617678
17-0003
whole blood
SepticShock
1
SepticShock
GSM1617679
18-0004
whole blood
SepticShock
1
SepticShock
GSM1617680
19-0006
whole blood
SepticShock
1
SepticShock
GSM1617681
19-0007
whole blood
SepticShock
1
SepticShock
GSM1617682
19-0008
whole blood
SepticShock
1
SepticShock
GSM1617683
19-0009
whole blood
SepticShock
1
SepticShock
GSM1617684
20-0002
whole blood
SepticShock
1
SepticShock
GSM1617685
20-0006
whole blood
SepticShock
1
SepticShock
GSM1617686
20-0007
whole blood
SepticShock
1
SepticShock
GSM1617687
20-002
whole blood
SepticShock
1
SepticShock
GSM1617688
22-0010
whole blood
Control
1
Healthy Control
GSM1617689
22-0013
whole blood
Control
1
Healthy Control
GSM1617690
01-0135
whole blood
SepticShock
1
SepticShock
GSM1617691
01-0148
whole blood
SepticShock
1
SepticShock
GSM1617692
01-0149
whole blood
SepticShock
1
SepticShock
GSM1617693
01-0150
whole blood
SepticShock
1
SepticShock
GSM1617694
01-0151
whole blood
SepticShock
1
SepticShock
GSM1617695
01-0152
whole blood
SepticShock
1
SepticShock
GSM1617696
01-0154
whole blood
SepticShock
1
SepticShock
GSM1617697
01-0155
whole blood
SepticShock
1
SepticShock
GSM1617698
01-0156
whole blood
SepticShock
1
SepticShock
GSM1617699
01-0157
whole blood
SepticShock
1
SepticShock
GSM1617700
05-0030
whole blood
SepticShock
1
SepticShock
GSM1617701
11-0111
whole blood
SepticShock
1
SepticShock
GSM1617702
15-0027
whole blood
SepticShock
1
SepticShock
GSM1617703
22-0018
whole blood
Control
1
Healthy Control
GSM1617704
22-0020
whole blood
Control
1
Healthy Control
GSM1617705
22-0023
whole blood
Control
1
Healthy Control
GSM1617706
14-0005
whole blood
Control
1
Healthy Control
GSM1617707
22-0009
whole blood
Control
1
Healthy Control
GSM1617708
01-0118
whole blood
SepticShock
1
SepticShock
GSM1617709
01-0119
whole blood
SepticShock
1
SepticShock
GSM1617710
01-0120
whole blood
SepticShock
1
SepticShock
GSM1617711
01-0121
whole blood
SepticShock
1
SepticShock
GSM1617712
01-0122
whole blood
SepticShock
1
SepticShock
GSM1617713
01-0123
whole blood
SepticShock
1
SepticShock
GSM1617714
01-0125
whole blood
SepticShock
1
SepticShock
GSM1617715
01-0126
whole blood
SepticShock
1
SepticShock
GSM1617716
01-0130
whole blood
SepticShock
1
SepticShock
GSM1617717
01-0108
whole blood
SepticShock
1
SepticShock
GSM1617718
01-0110
whole blood
SepticShock
1
SepticShock
GSM1617719
01-0111
whole blood
SepticShock
1
SepticShock
GSM1617720
04-0012
whole blood
Control
1
Healthy Control
GSM1617721
09-0003
whole blood
Control
1
Healthy Control
GSM1617722
11-0038
whole blood
Control
1
Healthy Control
GSM1617723
11-0042
whole blood
Control
1
Healthy Control
GSM1617724
11-0065
whole blood
Control
1
Healthy Control
GSM1617725
01-0101
whole blood
SepticShock
1
SepticShock
GSM1617726
01-0102
whole blood
SepticShock
1
SepticShock
GSM1617727
01-0103
whole blood
SepticShock
1
SepticShock
GSM1617728
01-0064
whole blood
SepticShock
1
SepticShock
GSM1617729
01-0068
whole blood
SepticShock
1
SepticShock
GSM1617730
01-0069
whole blood
SepticShock
1
SepticShock
GSM1617731
01-0071
whole blood
SepticShock
1
SepticShock
GSM1617732
01-0072
whole blood
SepticShock
1
SepticShock
GSM1617733
01-0073
whole blood
SepticShock
1
SepticShock
GSM1617734
01-0074
whole blood
SepticShock
1
SepticShock
GSM1617735
01-0077
whole blood
SepticShock
1
SepticShock
GSM1617736
01-0078
whole blood
SepticShock
1
SepticShock
GSM1617737
01-0079
whole blood
SepticShock
1
SepticShock
GSM1617738
01-0080
whole blood
SepticShock
1
SepticShock
GSM1617739
01-0047
whole blood
SepticShock
1
SepticShock
GSM1617740
01-0070
whole blood
SepticShock
1
SepticShock
GSM1617741
01-0086
whole blood
SepticShock
1
SepticShock
GSM1617742
01-0088
whole blood
SepticShock
1
SepticShock
GSM1617743
01-0104
whole blood
Control
1
Healthy Control
GSM1617744
01-0105
whole blood
Control
1
Healthy Control
GSM1617745
01-0106
whole blood
Control
1
Healthy Control
GSM1617746
04-0015
whole blood
Control
1
Healthy Control
GSM1617747
07-0004
whole blood
SepticShock
1
SepticShock
GSM1617748
10-0003
whole blood
SepticShock
1
SepticShock
GSM1617749
10-0009
whole blood
SepticShock
1
SepticShock
GSM1617750
10-0018
whole blood
SepticShock
1
SepticShock
GSM1617751
10-0019
whole blood
SepticShock
1
SepticShock
GSM1617752
11-0002
whole blood
SepticShock
1
SepticShock
GSM1617753
11-0007
whole blood
SepticShock
1
SepticShock
GSM1617754
11-0035
whole blood
SepticShock
1
SepticShock
GSM1617755
11-0077
whole blood
Control
1
Healthy Control
GSM1617756
11-0078
whole blood
Control
1
Healthy Control
GSM1617757
11-0080
whole blood
Control
1
Healthy Control
GSM1617758
11-0081
whole blood
Control
1
Healthy Control
GSM1617759
11-0082
whole blood
Control
1
Healthy Control
GSM1617760
11-0083
whole blood
Control
1
Healthy Control
GSM1617761
15-0017
whole blood
SepticShock
1
SepticShock
GSM1617762
18-0002
whole blood
SepticShock
1
SepticShock
GSM1617763
19-0001
whole blood
SepticShock
1
SepticShock
GSM1617764
19-0005
whole blood
SepticShock
1
SepticShock
GSM1617765
20-0003
whole blood
SepticShock
1
SepticShock
GSM1617766
21-0001
whole blood
SepticShock
1
SepticShock
GSM1617767
21-0003
whole blood
SepticShock
1
SepticShock

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