Whole blood transcriptome analysis of Septic shock patients according to early therapy response - GSE110487
Septic shock is the most severe complication of sepsis, associated with high mortality. The patient’s response to supportive therapy is very heterogeneous and the underlying ...
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We analyzed 31 patients (17 Responders and 14 Not Responders to early therapy). For each patient, 2 samples were collected. In particular the first sample (T1) collected ...
Septic shock (2021 ICD-10-CM code* = R65.21)
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Basecalls performed using CASAVA version 1.8.2Trimming performed with Trimmomatic v0.35, with following parameters: MINLEN:40, AVGQUAL:25 and TRAILING:15Trimmed reads aligned ...
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110487
Sample ID | tissue | Grouping | Sample Numbers | Sample Source | Sample characteristics |
---|---|---|---|---|---|
E04T1 | Whole blood cells collected from patient after septic shock | Responder T1 | GSM2992274 | Responder T1 patient1 | E04 |
E04T2 | Whole blood cells collected from patient after septic shock | Responder T2 | GSM2992275 | Responder T2 patient1 | E04 |
E07T1 | Whole blood cells collected from patient after septic shock | Not Responder T1 | GSM2992276 | Not Responder T1 patient1 | E07 |
E07T2 | Whole blood cells collected from patient after septic shock | Not Responder T2 | GSM2992277 | Not Responder T2 patient1 | E07 |
E15T1 | Whole blood cells collected from patient after septic shock | Not Responder T1 | GSM2992278 | Not Responder T1 patient2 | E15 |
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Sample ID | Tissue | Grouping | Sample Numbers | Sample Source | Sample characteristics | Timepoints | Clinical |
---|---|---|---|---|---|---|---|
E04T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992274 |
Responder T1 patient1 |
E04 |
T1 |
R |
E04T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992275 |
Responder T2 patient1 |
E04 |
T2 |
R |
E07T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992276 |
Not Responder T1 patient1 |
E07 |
T1 |
NR |
E07T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992277 |
Not Responder T2 patient1 |
E07 |
T2 |
NR |
E15T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992278 |
Not Responder T1 patient2 |
E15 |
T1 |
NR |
E15T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992279 |
Not Responder T2 patient2 |
E15 |
T2 |
NR |
E16T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992280 |
Not Responder T1 patient3 |
E16 |
T1 |
NR |
E16T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992281 |
Not Responder T2 patient3 |
E16 |
T2 |
NR |
E17T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992282 |
Not Responder T1 patient4 |
E17 |
T2 |
NR |
E17T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992283 |
Not Responder T2 patient4 |
E17 |
T1 |
NR |
E18T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992284 |
Responder T1 patient2 |
E18 |
T2 |
R |
E18T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992285 |
Responder T2 patient2 |
E18 |
T1 |
R |
E26T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992286 |
Not Responder T1 patient5 |
E26 |
T2 |
NR |
E26T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992287 |
Not Responder T2 patient5 |
E26 |
T1 |
NR |
E32T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992288 |
Responder T1 patient3 |
E32 |
T2 |
R |
E32T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992289 |
Responder T2 patient3 |
E32 |
T2 |
R |
E33T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992290 |
Not Responder T1 patient6 |
E33 |
T1 |
NR |
E33T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992291 |
Not Responder T2 patient6 |
E33 |
T2 |
NR |
E40T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992292 |
Not Responder T1 patient7 |
E40 |
T1 |
NR |
E40T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992293 |
Not Responder T2 patient7 |
E40 |
T2 |
NR |
E41T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992294 |
Not Responder T1 patient8 |
E41 |
T1 |
NR |
E41T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992295 |
Not Responder T2 patient8 |
E41 |
T2 |
NR |
G01T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992296 |
Not Responder T1 patient9 |
G01 |
T1 |
NR |
G01T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992297 |
Not Responder T2 patient9 |
G01 |
T2 |
NR |
G07T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992298 |
Responder T1 patient4 |
G07 |
T1 |
R |
G07T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992299 |
Responder T2 patient4 |
G07 |
T2 |
R |
G08T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992300 |
Not Responder T1 patient10 |
G08 |
T1 |
NR |
G08T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992301 |
Not Responder T2 patient10 |
G08 |
T2 |
NR |
G11T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992302 |
Responder T1 patient5 |
G11 |
T2 |
R |
G11T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992303 |
Responder T2 patient5 |
G11 |
T1 |
R |
G12T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992304 |
Not Responder T1 patient11 |
G12 |
T2 |
NR |
G12T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992305 |
Not Responder T2 patient11 |
G12 |
T1 |
NR |
G23T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992306 |
Responder T1 patient6 |
G23 |
T2 |
R |
G23T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992307 |
Responder T2 patient6 |
G23 |
T1 |
R |
G28T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992308 |
Responder T1 patient7 |
G28 |
T2 |
R |
G28T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992309 |
Responder T2 patient7 |
G28 |
T2 |
R |
G29T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992310 |
Responder T1 patient8 |
G29 |
T1 |
R |
G29T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992311 |
Responder T2 patient8 |
G29 |
T2 |
R |
G33T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992312 |
Responder T1 patient9 |
G33 |
T1 |
R |
G33T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992313 |
Responder T2 patient9 |
G33 |
T2 |
R |
G34T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992314 |
Responder T1 patient10 |
G34 |
T1 |
R |
G34T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992315 |
Responder T2 patient10 |
G34 |
T2 |
R |
G35T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992316 |
Not Responder T1 patient12 |
G35 |
T1 |
NR |
G35T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992317 |
Not Responder T2 patient12 |
G35 |
T2 |
NR |
G39T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992318 |
Responder T1 patient11 |
G39 |
T1 |
R |
G39T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992319 |
Responder T2 patient11 |
G39 |
T2 |
R |
G41T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992320 |
Responder T1 patient12 |
G41 |
T1 |
R |
G41T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992321 |
Responder T2 patient12 |
G41 |
T2 |
R |
G42T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992322 |
Not Responder T1 patient13 |
G42 |
T2 |
NR |
G42T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992323 |
Not Responder T2 patient13 |
G42 |
T1 |
NR |
G43T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992324 |
Responder T1 patient13 |
G43 |
T2 |
R |
G43T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992325 |
Responder T2 patient13 |
G43 |
T1 |
R |
G44T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992326 |
Responder T1 patient14 |
G44 |
T2 |
R |
G44T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992327 |
Responder T2 patient14 |
G44 |
T1 |
R |
G45T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992328 |
Responder T1 patient15 |
G45 |
T2 |
R |
G45T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992329 |
Responder T2 patient15 |
G45 |
T2 |
R |
G47T1 | Whole blood cells collected from patient after septic shock |
Not Responder T1 |
GSM2992330 |
Not Responder T1 patient14 |
G47 |
T1 |
NR |
G47T2 | Whole blood cells collected from patient after septic shock |
Not Responder T2 |
GSM2992331 |
Not Responder T2 patient14 |
G47 |
T2 |
NR |
G49T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992332 |
Responder T1 patient16 |
G49 |
T1 |
R |
G49T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992333 |
Responder T2 patient16 |
G49 |
T2 |
R |
G51T1 | Whole blood cells collected from patient after septic shock |
Responder T1 |
GSM2992334 |
Responder T1 patient17 |
G51 |
T1 |
R |
G51T2 | Whole blood cells collected from patient after septic shock |
Responder T2 |
GSM2992335 |
Responder T2 patient17 |
G51 |
T2 |
R |
Name | ||
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