You are not logged in. | Log in
In Progress
Clinical

Acute v. baseline PBMC gene expression in patients with Systemic Capillary Leak Syndrome - GSE97287

Purpose

The Systemic Capillary Leak Syndrome (SCLS) is an extremely rare and potentially life-treating vascular disorder of unknown etiology. SCLS is characterized by dramatic and transient episodes of hypotensive shock and edema due to plasma leakage into peripheral tissues. The disorder has garnered increased attention during the last several years because of the resemblance of its initial presentation to more common disorders such as systemic anaphylaxis, sepsis, and acute infections with the Ebola/Marburg family of filoviruses. Although approximately 70-80% of patients with SCLS have a concurrent monoclonal gammopathy of unknown significance (MGUS), any contribution of the paraprotein to acute flares is unknown. To identify circulating factors that contribute to the onset of acute SCLS crises, we performed transcriptomic profiling of paired peripheral blood mononuclear cell fractions obtained from patients during acute attacks and convalescent intervals using microarray. 61 genes were significantly up- or downregulated more than 2.5 fold in acute samples relative to baseline. One of the most upregulated genes was ADM, which encodes the vasoactive peptide adrenomedullin. The ADM surrogate pro-ADM was markedly elevated in SCLS acute sera compared to remission samples or sera from healthy controls. Monocytes and endothelial cells (ECs) from SCLS subjects expressed significantly more ADM in response to proinflammatory stimuli compared to healthy control cells. Application of ADM to ECs exerted protective effects on vascular barrier function. These results suggest a pathogenic contribution of ADM to the profound pressor-resistant hypotension that characterizes the initial stages of SCLS.

Hypothesis

--

Experimental Design

Peripheral blood mononuclear cells (PBMC) were collected from Systemic Capillary Leak Syndrome patients during a SCLS crisis or convalescent interval. Samples for both intervals, crisis (epi) and convalescent (bas), were successfully hybridized for 7 patients. An additional 5 patients are represented by a single disease interval, for a total of 19 samples.

Experimental Variables

Systemic capillary leak syndrome (Clarkson's Disease) - Rare disease+ (2021 ICD-10-CM code* = '+ https://rarediseases.info.nih.gov/diseases/1084/systemic-capillary-leak-syndrome)

Controls

--

Methods

Signal data was extracted from the image files with the Gene Expression module (v. 1.9.0) of the GenomeStudio software (v. 2011.1) from Illumina, Inc. Signal intensities were converted to log 2 scale. Probes that didn't show detection p-value < 0.1 in at least 2 arrays were removed from the dataset. After filtering probes, quantile normalization was applied across all arrays.

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE97287

Microarray
Illumina HumanHT-12 v4
19 Samples Loaded: 19
Human (Homo sapiens)
PBMC
Systemic capillary leak syndrome (Clarkson's Disease) - Rare disease+
Qiagen RNAeasy mini kit
Sample Set Spreadsheet
Please log in in order to upload files.
Samples Preview
Sample ID !Sample_title tissue cell type diagnosis disease interval
GSM2561028 scls11-bas-A7680 Blood Peripheral blood mononuclear cells Systemic Capillary Leak Syndrome convalescent
GSM2561029 scls11-epi-A7681 Blood Peripheral blood mononuclear cells Systemic Capillary Leak Syndrome crisis
GSM2561030 scls12-bas-A7682 Blood Peripheral blood mononuclear cells Systemic Capillary Leak Syndrome convalescent
GSM2561031 scls12-epi-A7683 Blood Peripheral blood mononuclear cells Systemic Capillary Leak Syndrome crisis
GSM2561032 scls1-bas-A1299 Blood Peripheral blood mononuclear cells Systemic Capillary Leak Syndrome convalescent
Please log in in order to upload files.
File
Log2 Transformed
Raw Signal
  •   |  View in GXB »
Clinical Datasource
Links

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID !Sample Title Tissue Cell type Diagnosis Disease interval Subjectid
GSM2561028
scls11-bas-A7680
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls11
GSM2561029
scls11-epi-A7681
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls11
GSM2561030
scls12-bas-A7682
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls12
GSM2561031
scls12-epi-A7683
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls12
GSM2561032
scls1-bas-A1299
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls1
GSM2561033
scls2-bas-A1300
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls2
GSM2561034
scls3-bas-A2299
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls3
GSM2561035
scls3-epi-A2300
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls3
GSM2561036
scls4-epi-A2302
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls4
GSM2561037
scls10-bas-A6618
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls10
GSM2561038
scls5-bas-A6373
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls5
GSM2561039
scls5-epi-A6374
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls5
GSM2561040
scls6-bas-A6375
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls6
GSM2561041
scls6-epi-A6376
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls6
GSM2561042
scls7-epi-A6378
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls7
GSM2561043
scls8-bas-A6379
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls8
GSM2561044
scls8-epi-A6380
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls8
GSM2561045
scls9-bas-A6381
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
convalescent
scls9
GSM2561046
scls9-epi-A6382
Blood
Peripheral blood mononuclear cells
Systemic Capillary Leak Syndrome
crisis
scls9

Group Sets View in Gene Expression Browser

Name  
All Samples   View
Disease interval Default  View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set  
All Samples
Disease interval
Your bug report has been sent!