Peripheral blood RNA gene expression profiling in patients with bacterial meningitis - GSE40586
The aim of present study was to describe the genetic pathways activated during the community acquired bacterial meningitis (BM) by using genome-wide RNA expression profiling ...
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22 bacterial meningitis patients and 18 healthy controls
Bacterial meningitis (2021 ICD-10-CM code* = G00.9)
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Images were processed using the Affymetrix Microarray Suite 5.0, cel files were normalized with RMA and further analyzed using Bioconductor software based on R language. ...
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE40586
Sample ID | !Sample_title | tissue | sample group | outcome | bacteria |
---|---|---|---|---|---|
GSM997332 | US_BM_01_M038 | whole blood | bacterial meningitis | good | Streptococcus pneumoniae (Spn) |
GSM997333 | US_BM_02_K003 | whole blood | healthy control | normal | none |
GSM997334 | US_BM_03_K027 | whole blood | healthy control | normal | none |
GSM997335 | US_BM_04_M042 | whole blood | bacterial meningitis | good | Streptococcus pneumoniae (Spn) |
GSM997336 | US_BM_05_M025 | whole blood | bacterial meningitis | bad | A2 (non-Spn) |
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Sample ID | !Sample Title | Tissue | Sample group | Outcome | Bacteria |
---|---|---|---|---|---|
GSM997332 | US_BM_01_M038 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997333 | US_BM_02_K003 |
whole blood |
healthy control |
normal |
none |
GSM997334 | US_BM_03_K027 |
whole blood |
healthy control |
normal |
none |
GSM997335 | US_BM_04_M042 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997336 | US_BM_05_M025 |
whole blood |
bacterial meningitis |
bad |
A2 (non-Spn) |
GSM997337 | US_BM_06_K016 |
whole blood |
healthy control |
normal |
none |
GSM997338 | US_BM_07_K024 |
whole blood |
healthy control |
normal |
none |
GSM997339 | US_BM_08_M040 |
whole blood |
bacterial meningitis |
good |
A2 (non-Spn) |
GSM997340 | US_BM_09_M032 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997341 | US_BM_10_K012 |
whole blood |
healthy control |
normal |
none |
GSM997342 | US_BM_11_K010 |
whole blood |
healthy control |
normal |
none |
GSM997343 | US_BM_12_K004 |
whole blood |
healthy control |
normal |
none |
GSM997344 | US_BM_13_M031 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997345 | US_BM_14_K005 |
whole blood |
healthy control |
normal |
none |
GSM997346 | US_BM_16_M047 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997347 | US_BM_17_K006 |
whole blood |
healthy control |
good |
none |
GSM997348 | US_BM_18_M004 |
whole blood |
bacterial meningitis |
good |
A2 (non-Spn) |
GSM997349 | US_BM_19_M039 |
whole blood |
bacterial meningitis |
good |
A2 (non-Spn) |
GSM997350 | US_BM_20_M006 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997351 | US_BM_21_K011 |
whole blood |
healthy control |
normal |
none |
GSM997352 | US_BM_22_M036 |
whole blood |
bacterial meningitis |
good |
A2 (non-Spn) |
GSM997353 | US_BM_23_M014 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997354 | US_BM_24_M002 |
whole blood |
bacterial meningitis |
good |
A2 (non-Spn) |
GSM997355 | US_BM_25_M012 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997356 | US_BM_26_M028 |
whole blood |
bacterial meningitis |
bad |
A2 (non-Spn) |
GSM997357 | US_BM_27_M027 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997358 | US_BM_28_K007 |
whole blood |
healthy control |
normal |
none |
GSM997359 | US_BM_29_M023 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997360 | US_BM_30_K018 |
whole blood |
healthy control |
normal |
none |
GSM997361 | US_BM_31_K008 |
whole blood |
healthy control |
normal |
none |
GSM997362 | US_BM_32_M029 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997363 | US_BM_33_K009 |
whole blood |
healthy control |
normal |
none |
GSM997364 | US_BM_34_M046 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997365 | US_BM_35_M041 |
whole blood |
bacterial meningitis |
bad |
Streptococcus pneumoniae (Spn) |
GSM997366 | US_BM_36_K020 |
whole blood |
healthy control |
normal |
none |
GSM997367 | US_BM_37_M022 |
whole blood |
bacterial meningitis |
good |
Streptococcus pneumoniae (Spn) |
GSM997368 | US_BM_38_K015 |
whole blood |
healthy control |
normal |
none |
GSM997369 | US_BM_39_K013 |
whole blood |
healthy control |
normal |
none |
GSM997370 | US_BM_40_K014 |
whole blood |
healthy control |
normal |
none |
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