Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Sepsis Datasets)-GSE100159 [Sepsis, Septicemic Melioidosis]

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Sepsis (35 condition, 12 control, 47 total)

Experimental Variables

Septicemic Melioidosis (2021 ICD-10-CM code* = A24.1)

Controls

Methods

The data were normalised using average normalization with Genome Studio

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100159

Expected Samples:

47 Samples Loaded: 47

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Septicemic Melioidosis

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	tissue	dataset	Sample class	Sample class_v1
GSM2672557	4444581080_H: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672558	4444581080_I: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672559	4444581080_J: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672560	4444581080_K: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672561	4444581080_L: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control

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File
sampleset4000217_sampleannotations_GSE100159.csv Sample Set Spreadsheet
sampleset4000217_sampleannotations_GSE100159.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Tissue	Dataset	Sample class	Sample class V1
GSM2672557	4444581080_H: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672558	4444581080_I: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672559	4444581080_J: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672560	4444581080_K: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672561	4444581080_L: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672562	4444581081_A: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672563	4444581081_B: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672564	4444581081_C: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672565	4444581081_L: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672566	4444581089_B: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672567	4444581089_C: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672568	4444581089_D: whole blood-Sepsis-Control	whole blood	Sepsis	Control	Healthy Control
GSM2672569	4444581080_D: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672570	4444581080_E: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672571	4444581080_F: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672572	4444581080_G: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672573	4444581081_H: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672574	4444581081_I: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672575	4444581081_J: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672576	4444581081_K: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672577	4444581086_C: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672578	4444581086_D: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672579	4444581086_E: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672580	4444581086_F: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672581	4444581086_G: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672582	4444581089_E: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672583	4444581089_F: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672584	4444581089_G: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672585	4444581089_H: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672586	4444581089_I: whole blood-Sepsis-melioidosis	whole blood	Sepsis	melioidosis	Septicemic Melioidosis
GSM2672587	4444581080_A: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672588	4444581080_B: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672589	4444581080_C: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672590	4444581081_D: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672591	4444581081_E: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672592	4444581081_F: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672593	4444581081_G: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672594	4444581086_H: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672595	4444581086_I: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672596	4444581086_J: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672597	4444581086_K: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672598	4444581089_A: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672599	4444581089_J: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672600	4444581089_K: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672601	4444581089_L: whole blood-Sepsis-other infection	whole blood	Sepsis	other infection	Other Sepsis
GSM2672602	4444581086_A: whole blood-Sepsis-Recovery	whole blood	Sepsis	Recovery	Healthy Control
GSM2672603	4444581086_B: whole blood-Sepsis-Recovery	whole blood	Sepsis	Recovery	Healthy Control

Group Sets View in Gene Expression Browser

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